Franchise 76 seasons 584–547–10 all-time 29 playoff trips 2 Super Bowls
1995 players
Passing
| Jim Harbaugh | 314 | 200 | 2,575 | 17 | 5 | 8.2 |
| Craig Erickson | 83 | 50 | 586 | 3 | 4 | 7.1 |
| Paul Justin | 36 | 20 | 212 | 0 | 2 | 5.9 |
| Chris Gardocki | 1 | 0 | 0 | 0 | 0 | 0.0 |
| Vince Workman | 1 | 0 | 0 | 0 | 0 | 0.0 |
Rushing
| Marshall Faulk | 289 | 1,078 | 11 | 3.7 |
| Roosevelt Potts | 65 | 309 | 0 | 4.8 |
| Jim Harbaugh | 52 | 235 | 2 | 4.5 |
| Vince Workman | 44 | 165 | 1 | 3.8 |
| Lamont Warren | 47 | 152 | 1 | 3.2 |
| Aaron Bailey | 1 | 34 | 0 | 34.0 |
| Craig Erickson | 9 | 14 | 0 | 1.6 |
| Ronald Humphrey | 2 | 6 | 0 | 3.0 |
| Paul Justin | 3 | 1 | 0 | 0.3 |
| Zack Crockett | 1 | 0 | 0 | 0.0 |
Receiving
| Sean Dawkins | 85 | 52 | 784 | 3 | 9.2 |
| Ken Dilger | 55 | 42 | 635 | 4 | 11.5 |
| Marshall Faulk | 75 | 56 | 475 | 3 | 6.3 |
| Floyd Turner | 63 | 35 | 431 | 4 | 6.8 |
| Aaron Bailey | 37 | 21 | 379 | 3 | 10.2 |
| Roosevelt Potts | 33 | 21 | 228 | 1 | 6.9 |
| Lamont Warren | 23 | 17 | 159 | 0 | 6.9 |
| Flipper Anderson | 13 | 8 | 111 | 2 | 8.5 |
| Brian Stablein | 22 | 8 | 95 | 0 | 4.3 |
| Vince Workman | 22 | 13 | 74 | 0 | 3.4 |
| Zack Crockett | 4 | 2 | 35 | 0 | 8.8 |
| Charles Arbuckle | 4 | 4 | 33 | 0 | 8.2 |
| Ronald Humphrey | 2 | 2 | 11 | 0 | 5.5 |
| Bradford Banta | 5 | 1 | 6 | 0 | 1.2 |
| Jim Harbaugh | 1 | 1 | -9 | 0 | -9.0 |
Defense
| Jeff Herrod | MLB | 124 | 82 | 0.0 | 0 | 2 |
| Quentin Coryatt | RLB | 108 | 87 | 2.5 | 1 | 1 |
| Steve Grant | LLB | 107 | 76 | 2.0 | 1 | 0 |
| Ray Buchanan | LCB | 83 | 68 | 1.0 | 2 | 1 |
| David Tate | SS | 83 | 61 | 0.0 | 0 | 1 |
| Jason Belser | FS | 76 | 63 | 0.0 | 1 | 1 |
| Tony McCoy | LDT | 68 | 50 | 2.5 | 0 | 3 |
| Tony Bennett | RDE | 57 | 47 | 10.5 | 0 | 3 |
| Tony Siragusa | RDT | 49 | 41 | 2.0 | 0 | 1 |
| Bernard Whittington | LDE | 48 | 32 | 2.0 | 0 | 1 |
| Trev Alberts | LB | 37 | 25 | 2.0 | 0 | 2 |
| Eugene Daniel | RCB | 35 | 28 | 0.0 | 3 | 0 |
| Ellis Johnson | DT | 18 | 15 | 4.5 | 0 | 0 |
| Ashley Ambrose | DB | 14 | 11 | 0.0 | 3 | 1 |
| Derwin Gray | DB | 14 | 10 | 0.0 | 1 | 2 |
| Devon McDonald | LB | 14 | 8 | 0.0 | 0 | 0 |
| Damon Watts | DB | 11 | 10 | 0.0 | 1 | 0 |
| Scott Radecic | LB | 5 | 2 | 0.0 | 0 | 0 |
| Freddie Joe Nunn | DE | 4 | 2 | 0.0 | 0 | 0 |
| Ray McElroy | DB | 3 | 2 | 0.0 | 0 | 0 |