Regular season
| Year | Team | Games | Att | Cmp | Cmp% | Pass Yds | Pass TD | INT | Sacks | Y/A | Rating |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2011 | SF | 2 | 5 | 3 | 60.0 | 35 | 0 | 0 | 0 | 7.0 | 81.2 |
| 2012 | SF | 13 | 218 | 136 | 62.4 | 1814 | 10 | 3 | 16 | 8.3 | 98.3 |
| 2013 | SF | 16 | 416 | 243 | 58.4 | 3197 | 21 | 8 | 39 | 7.7 | 91.6 |
| 2014 | SF | 16 | 478 | 289 | 60.5 | 3369 | 19 | 10 | 52 | 7.0 | 86.4 |
| 2015 | SF | 9 | 244 | 144 | 59.0 | 1615 | 6 | 5 | 28 | 6.6 | 78.5 |
| 2016 | SF | 11 | 331 | 196 | 59.2 | 2241 | 16 | 4 | 36 | 6.8 | 90.7 |