Franchise 77 seasons 609–519–14 all-time 30 playoff trips 5 Super Bowls
1994 players
Passing
| Steve Young | 461 | 324 | 3,969 | 35 | 10 | 8.6 |
| Elvis Grbac | 50 | 35 | 393 | 2 | 1 | 7.9 |
Rushing
| Ricky Watters | 239 | 877 | 6 | 3.7 |
| William Floyd | 87 | 305 | 6 | 3.5 |
| Steve Young | 58 | 293 | 7 | 5.1 |
| Marc Logan | 33 | 143 | 1 | 4.3 |
| Derek Loville | 31 | 99 | 0 | 3.2 |
| Jerry Rice | 7 | 93 | 2 | 13.3 |
| Adam Walker | 13 | 54 | 1 | 4.2 |
| Dexter Carter | 8 | 34 | 0 | 4.2 |
| Elvis Grbac | 13 | 1 | 0 | 0.1 |
| John Taylor | 2 | -2 | 0 | -1.0 |
Receiving
| Jerry Rice | 151 | 112 | 1,499 | 13 | 9.9 |
| Ricky Watters | 89 | 66 | 719 | 5 | 8.1 |
| Brent Jones | 74 | 49 | 670 | 9 | 9.1 |
| John Taylor | 65 | 41 | 531 | 5 | 8.2 |
| Nate Singleton | 29 | 21 | 294 | 2 | 10.1 |
| William Floyd | 26 | 19 | 145 | 0 | 5.6 |
| Ted Popson | 17 | 13 | 141 | 0 | 8.3 |
| Ed McCaffrey | 14 | 11 | 131 | 2 | 9.4 |
| Dexter Carter | 7 | 7 | 99 | 0 | 14.1 |
| Marc Logan | 25 | 16 | 97 | 1 | 3.9 |
| Derek Loville | 4 | 2 | 26 | 0 | 6.5 |
| Brett Carolan | 3 | 2 | 10 | 0 | 3.3 |
Defense
| Ken Norton Jr. | RLB | 86 | 75 | 0.0 | 1 | 1 |
| Eric Davis | LCB | 74 | 68 | 0.0 | 1 | 1 |
| Merton Hanks | FS | 72 | 65 | 0.5 | 7 | 0 |
| Tim McDonald | SS | 72 | 67 | 0.0 | 2 | 1 |
| Gary Plummer | MLB | 64 | 56 | 0.0 | 1 | 0 |
| Lee Woodall | LLB | 60 | 45 | 1.0 | 0 | 3 |
| Bryant Young | LDT | 49 | 45 | 6.0 | 0 | 0 |
| Rickey Jackson | RDE | 40 | 37 | 3.5 | 0 | 2 |
| Dana Stubblefield | RDT | 38 | 34 | 8.5 | 0 | 3 |
| Deion Sanders | RCB | 36 | 34 | 0.0 | 6 | 0 |
| Dana Hall | DB | 32 | 24 | 0.0 | 2 | 0 |
| Toi Cook | DB | 26 | 25 | 0.0 | 1 | 1 |
| Dennis Brown | LDE | 24 | 19 | 3.0 | 1 | 1 |
| Rhett Hall | DT | 12 | 9 | 4.0 | 0 | 0 |
| Charles Mann | DE | 12 | 11 | 1.0 | 0 | 0 |
| Todd Kelly | LB | 9 | 7 | 3.5 | 0 | 2 |
| Dedrick Dodge | DB | 8 | 8 | 0.0 | 0 | 1 |
| Richard Dent | DE | 8 | 7 | 2.0 | 0 | 1 |
| Tyronne Drakeford | DB | 8 | 7 | 0.0 | 1 | 0 |
| Kevin Mitchell | LB | 6 | 6 | 0.0 | 0 | 0 |
| Troy Wilson | DE | 5 | 4 | 2.0 | 0 | 0 |
| Antonio Goss | LB | 3 | 2 | 0.0 | 0 | 0 |
| Tim Harris | DE/LB | 3 | 2 | 2.0 | 0 | 0 |
| Artie Smith | DE | 3 | 3 | 0.0 | 0 | 0 |
| Mark Thomas | DE | 2 | 2 | 1.0 | 0 | 0 |