Franchise 77 seasons 609–519–14 all-time 30 playoff trips 5 Super Bowls
1998 players
Passing
| Steve Young | 517 | 322 | 4,170 | 36 | 12 | 8.1 |
| Ty Detmer | 38 | 24 | 312 | 4 | 3 | 8.2 |
| Terry Kirby | 1 | 1 | 28 | 1 | 0 | 28.0 |
Rushing
| Garrison Hearst | 310 | 1,570 | 7 | 5.1 |
| Steve Young | 70 | 454 | 6 | 6.5 |
| Terry Kirby | 48 | 258 | 3 | 5.4 |
| Chuck Levy | 25 | 112 | 1 | 4.5 |
| Marc Edwards | 22 | 94 | 1 | 4.3 |
| Terrell Owens | 4 | 53 | 1 | 13.2 |
| Ty Detmer | 8 | 7 | 0 | 0.9 |
| Reggie Roby | 1 | 0 | 0 | 0.0 |
| Jim Druckenmiller | 3 | -4 | 0 | -1.3 |
Receiving
| Jerry Rice | 151 | 82 | 1,157 | 9 | 7.7 |
| Terrell Owens | 104 | 67 | 1,097 | 14 | 10.5 |
| J.J. Stokes | 93 | 63 | 770 | 8 | 8.3 |
| Garrison Hearst | 56 | 39 | 535 | 2 | 9.6 |
| Irv Smith | 41 | 25 | 266 | 5 | 6.5 |
| Marc Edwards | 32 | 22 | 218 | 2 | 6.8 |
| Terry Kirby | 19 | 16 | 134 | 0 | 7.1 |
| Greg Clark | 26 | 12 | 124 | 1 | 4.8 |
| Iheanyi Uwaezuoke | 8 | 3 | 67 | 0 | 8.4 |
| Mark Harris | 2 | 2 | 67 | 0 | 33.5 |
| Chuck Levy | 18 | 15 | 64 | 0 | 3.6 |
| Fred Beasley | 1 | 1 | 11 | 0 | 11.0 |
Defense
| Ken Norton Jr. | RLB | 115 | 93 | 2.0 | 0 | 2 |
| Winfred Tubbs | MLB | 86 | 60 | 1.0 | 1 | 2 |
| Tim McDonald | SS | 78 | 68 | 4.0 | 4 | 0 |
| Lee Woodall | LLB | 59 | 46 | 0.0 | 1 | 0 |
| Bryant Young | LDT | 54 | 43 | 9.5 | 0 | 2 |
| Darnell Walker | LCB/RCB | 51 | 48 | 0.0 | 4 | 0 |
| R.W. McQuarters | RCB | 49 | 45 | 0.0 | 0 | 0 |
| Merton Hanks | FS | 48 | 42 | 0.5 | 4 | 1 |
| Chris Doleman | RDE | 45 | 31 | 15.0 | 0 | 4 |
| Junior Bryant | RDT | 44 | 31 | 5.0 | 0 | 1 |
| Roy Barker | LDE | 35 | 31 | 12.0 | 1 | 3 |
| Antonio Langham | LCB | 33 | 33 | 0.0 | 1 | 0 |
| Marquez Pope | DB | 20 | 17 | 0.0 | 1 | 0 |
| Zack Bronson | DB | 17 | 17 | 0.0 | 4 | 0 |
| Brentson Buckner | DE | 16 | 10 | 0.5 | 0 | 0 |
| Lance Schulters | DB | 15 | 12 | 0.0 | 0 | 0 |
| Gabe Wilkins | DE | 10 | 10 | 0.0 | 0 | 0 |
| Jeff Posey | DE | 9 | 7 | 0.5 | 0 | 1 |
| Shane Bonham | DT | 7 | 7 | 0.0 | 0 | 0 |
| Tyrone Legette | DB | 4 | 4 | 0.0 | 0 | 0 |
| David Richie | NT | 2 | 1 | 0.0 | 0 | 0 |
| Tony Blevins | DB | 1 | 0 | 0.0 | 0 | 0 |
| Curtis Buckley | DB | 1 | 1 | 0.0 | 0 | 1 |
| Tony Peterson | LB | 0 | 0 | 1.0 | 0 | 0 |